Author

Madison Flory

University of KentuckyORCID 0009-0000-0784-1513Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Ashfaqul M. AlamiD· 2 shared Violet Newhart· 2 shared Angela Gao· 1 shared Angela Y. GaoiD· 1 shared Anna Edens· 1 shared Paloma BravoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 12 mutual co-author links

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2 shared papersMolecular Biology

Ashfaqul M. AlamORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 19, 2026

Single-cell profiling reveals disruption of cell-cycle homeostasis following JDP2 depletion in colorectal epithelial cells

Violet Newhart, Angela Y. Gao, Anna Edens…·Ashfaqul M. Alam

This study shows JDP2 depletion disrupts cell-cycle homeostasis in colorectal epithelial cells, increasing proliferation and altering transcriptional states.

DOI 10.64898/2026.09.14.751340

humanscRNA-seq

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MicrobiologybioRxivPreprintSep 30, 2025

Pro-restitutive Bacteroides thetaiotaomicron reprograms the transcriptome of intestinal epithelial cells by modulating the expression of genes essential for proliferation and migration.

Angela Gao, Violet Newhart, Madison Flory, Ashfaqul M. Alam

This study shows that Bacteroides thetaiotaomicron modulates gene expression in intestinal epithelial cells to promote mucosal repair and barrier function during gut inflammation resolution.

2 citations

mousebulk RNA-seq

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