Author

Divya Meparambu Prabhakaran

Tata Institute of Fundamental ResearchORCID 0009-0000-0968-1939Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Organism:E. coli· 1 Research Focus:phylogenetics / evolution· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Amitesh AnandiD· 2 shared Snehal V. KhairnariD· 2 shared Abhirath AnandiD· 1 shared Adam M. FeistiD· 1 shared Akshay M. ShirsathiD· 1 shared Arjun PateliD· 1 shared Bernhard Ørn PalssoniD· 1 shared Neha Banwani· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 26 mutual co-author links

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2 shared papersSystems Biology

Amitesh AnandORCID

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2 papers

Recent·Most cited

Systems BiologyiSciencePeer-reviewedJan 15, 2026

Aerobicity stimulon in Escherichia coli revealed using multi-scale computational systems biology of adapted respiratory variants

Arjun Patel, Neha Banwani, Raegan Mink…·Amitesh Anand

The paper identifies an aerobicity stimulon in E. coli through computational analysis of evolved respiratory variants, showing gene groups co-regulated with aerobic capacity and proteome reallocation.

4 citationstop 3%

E. colibulk RNA-seq

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MicrobiologyGenome Biology and EvolutionPeer-reviewedJul 30, 2025

Hidden Markov Model-Based Prokaryotic Genome Space Mining Reveals the Widespread Pervasiveness of Complex I and Its Potential Evolutionary Scheme

Akshay M. Shirsath, Snehal V. Khairnar, Abhirath Anand…·Amitesh Anand

The paper uses Hidden Markov Models to analyze prokaryotic genomes and reveals the widespread presence and evolutionary patterns of Complex I.

1 citation

bacteria (other)whole-genome sequencing

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