Author

Mara Santarelli

Institut PasteurORCID 0009-0000-5414-3726Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Anna PirttikoskiiD· 1 shared Anna VähärautioiD· 1 shared Benno SchwikowskiiD· 1 shared Carola DoerriD· 1 shared Charity W. LawiD· 1 shared David Fontaneda-ArenasiD· 1 shared Emmet McCormackiD· 1 shared Gergely CsabaiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperCancer Biology

Anna PirttikoskiORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintMar 6, 2026

Single-Cell Transcriptomic Signatures Enable Stratified Combination Therapy for Platinum-Resistant Ovarian Cancer

Laura Gall-Mas, Katrin Kleinmanns, Anna Pirttikoski…·Benno Schwikowski

The paper uses single-cell RNA sequencing to identify resistance signatures in ovarian cancer and develops a framework for combination therapy with carboplatin.

DOI 10.64898/2026.03.04.709546

humanscRNA-seq

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BioinformaticsBriefings in BioinformaticsPeer-reviewedNov 11, 2019

Towards a gold standard for benchmarking gene set enrichment analysis

Ludwig Geistlinger, Gergely Csaba, Mara Santarelli…·Levi Waldron

The paper benchmarks gene set enrichment methods using a curated compendium of disease datasets, identifying performance differences and providing recommendations for improved analysis.

139 citationstop 3%

humanbulk RNA-seq

𝕏 PostBluesky