Author

Fatwir S. Mohammed

Allen Institute for Cell ScienceORCID 0009-0000-7640-3541Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:deep learning· 2 Organism:human· 2 Approach:contrastive learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Benjamin MorrisiD· 2 shared Julie A. TheriotiD· 2 shared Matheus Palhares VianaiD· 2 shared Saurabh S. MogreiD· 2 shared Susanne M. RafelskiiD· 2 shared Alexandra J. Ferrante· 1 shared Amber PhaniD· 1 shared Antoine BorensztejniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBiophysics

Benjamin MorrisORCID

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintJul 11, 2026

Dynamics of ML-based Morphological Features Indicate a Shear Stress-Dependent Bifurcation of hiPSC-Derived Endothelial Cell States

Erin Angelini, Chantelle L. Leveille, Serge E. Parent…·Matheus Palhares Viana

The paper uses ML to analyze morphological dynamics of hiPSC-derived endothelial cells under shear stress, identifying a bifurcation between two stable cell states.

DOI 10.64898/2026.07.07.736803

humanfluorescence / live-cell microscopy

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Cell BiologyNature MethodsPeer-reviewedJul 1, 2025

Interpretable representation learning for 3D multi-piece intracellular structures using point clouds

Ritvik Vasan, Alexandra J. Ferrante, Antoine Borensztejn…·Matheus Palhares Viana

This paper introduces a morphology-appropriate representation learning framework for 3D multi-piece intracellular structures, showing improved sub-cluster discovery and phenotypic profiling.

8 citations

humanimaging

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