Author

Lisa Levy

Fred Hutch Cancer CenterORCID 0009-0001-3367-4760Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Christian DieneriD· 2 shared Johanna W. LampeiD· 2 shared Katherine Ramos SarmientoiD· 2 shared Sean M. GibbonsiD· 2 shared Alex V. Carr· 1 shared Crystal Perez· 1 shared Erin Ostrem LossiD· 1 shared Gechlang TangiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersMicrobiology

Christian DienerORCID

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2 papers

Recent·Most cited

MicrobiologymSystemsPeer-reviewedJul 31, 2025

Metagenomic estimation of absolute bacterial biomass in the mammalian gut through host-derived read normalization.

Gechlang Tang, Alex V. Carr, Crystal Perez…·Sean M. Gibbons

This paper estimates absolute bacterial biomass in the gut using host-derived read normalization from metagenomic data, showing it tracks antibiotic treatment response in mice and humans.

23 citationstop 2%

humanmouse

𝕏 PostBluesky

Systems BiologybioRxivPreprintFeb 28, 2023

Microbial community-scale metabolic modeling predicts personalized short chain fatty acid production profiles in the human gut.

Nick Quinn-Bohmann, Tomasz Maciej Wilmanski, Katherine Ramos Sarmiento…·Sean M. Gibbons

This paper uses microbial community-scale metabolic modeling to predict individual-specific short chain fatty acid production profiles in the human gut and links these predictions to clinical health markers.

8 citations

humanmetagenomics

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