Johanna W. Lampe

This study shows that higher diet quality reduces ectopic adiposity, and this effect is partially mediated by gut microbiota, specifically four bacterial genera.

This paper estimates absolute bacterial biomass in the gut using host-derived read normalization from metagenomic data, showing it tracks antibiotic treatment response in mice and humans.

This paper uses microbial community-scale metabolic modeling to predict individual-specific short chain fatty acid production profiles in the human gut and links these predictions to clinical health markers.

The paper introduces a Bayesian classifier for 16S rRNA metagenomic data, showing it outperforms existing methods when sample size to dimensionality ratio is small.