Author

Alex V. Carr

Institute for Systems BiologyPrimary ORCID profile (0009-0007-8969-0931 · 3 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Alex V. CarriD3 papers · University of Washington

Biology Disciplines

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Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Adam P. ArkiniD· 1 shared Benjamin P. BoweniD· 1 shared Christian DieneriD· 1 shared Crystal Perez· 1 shared Garth FisheriD· 1 shared Gechlang TangiD· 1 shared Johanna W. LampeiD· 1 shared Katherine Ramos SarmientoiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperSystems Biology

Adam P. ArkinORCID

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2 papers

Recent·Most cited

Metagenomic estimation of absolute bacterial biomass in the mammalian gut through host-derived read normalization.

Gechlang Tang, Alex V. Carr, Crystal Perez, Katherine Ramos Sarmiento, Lisa Levy, Johanna W. Lampe, Christian Diener, Sean M. Gibbons

This paper estimates absolute bacterial biomass in the gut using host-derived read normalization from metagenomic data, showing it tracks antibiotic treatment response in mice and humans.

mSystems · Jul 31, 2025Peer-reviewedMicrobiology

Deciphering microbial interactions in synthetic human gut microbiome communities

Ophelia S. Venturelli, Alex V. Carr, Garth Fisher, Ryan H. Hsu, Rebecca Lau, Benjamin P. Bowen, Susan E. Hromada, Trent R. Northen, Adam P. Arkin

The paper develops a model-guided framework to predict microbial interactions in synthetic human gut microbiome communities and identifies key ecological drivers and network design principles.

Molecular Systems Biology · Jun 1, 2018Peer-reviewedSystems Biology