Author

Pauline Auffret

IfremerORCID 0009-0001-3834-7670Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genetics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:non-human primate· 2 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Jérémie Vidal‐DupioliD· 2 shared Jérémy Le LuyeriD· 2 shared A. ValdiviesoiD· 1 shared Akbar ZainuiD· 1 shared Alexandre FellousiD· 1 shared Bernard de MassyiD· 1 shared Câline BassetiD· 1 shared Camille ClérissiiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersEvolutionary Biology

Jérémie Vidal‐DupiolORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintAug 9, 2026

Decoupling epigenetic variation from genetic variation reveals complementary dimensions of coral eco-evolutionary dynamics

Pauline Buso, Jeanne Gouspy, Riccardo Rodolfo‐Metalpa…·Olivier Rey

The paper decouples genetic and epigenetic variation in corals to show they provide complementary insights into eco-evolutionary dynamics.

DOI 10.64898/2026.08.04.742665

non-human primateDNA methylation

𝕏 PostBluesky

GeneticsbioRxivPreprintMay 17, 2023

The FIGNL1-FIRRM complex is required to complete meiotic recombination in the mouse and prevents massive DNA damage-independent RAD51 and DMC1 loading

Akbar Zainu, Dupaigne Pauline, Soumya Bouchouika…·Frédéric Baudat

This study identifies the FIGNL1-FIRRM complex as essential for completing meiotic recombination in mice by regulating RAD51 and DMC1 loading, independent of DNA damage.

4 citations

mouseexperimental assay

𝕏 PostBluesky

GenomicsAnimal MicrobiomePeer-reviewedMay 7, 2021

Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection

Jérémy Le Luyer, Quentin Schull, Pauline Auffret…·Denis Saulnier

The paper uses dual RNAseq to study the kinetics of skin microbiome and host response to T. maritimum infection in fish, finding immune gene upregulation in resistant individuals.

16 citations

non-human primatebulk RNA-seq

𝕏 PostBluesky

Molecular BiologyBMC GenomicsPeer-reviewedFeb 6, 2019

Whole transcriptome sequencing and biomineralization gene architecture associated with cultured pearl quality traits in the pearl oyster, Pinctada margaritifera

Jérémy Le Luyer, Pauline Auffret, Virgile Quillien…·Chin‐Long Ky

The paper uses RNA-seq to compare transcriptome expression in pearl sacs of P. margaritifera producing high and low quality pearls, identifying gene expression differences and alternative splicing patterns in biomineralization genes.

31 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky