Author

Dominik Grabarczyk

University of EdinburghORCID 0009-0001-4340-430XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Approach:transformer / foundation model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:human· 1 Organism:mouse· 1 Research Focus:protein design· 1 Organism:rat· 1

Frequent Co-Authors

Javier A. AlfaroiD· 2 shared Maciej ParysiD· 2 shared Mikołaj KocikowskiiD· 2 shared Shay B. CoheniD· 2 shared Douglas R. HoustoniD· 1 shared Ted R. HuppiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Javier A. AlfaroORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 18, 2026

SpeciefAI: Multi-species mRNA-level Antibody Framework Generation using Transformers

Dominik Grabarczyk, Mikołaj Kocikowski, Maciej Parys…·Javier A. Alfaro

SpeciefAI generates species-specific mRNA and protein sequences for antibodies and nanobodies using a transformer model trained on six species.

DOI 10.64898/2026.03.16.712018

𝕏 PostBluesky

BioinformaticsImmunoInformaticsPeer-reviewedNov 8, 2025

DoggifAI: a transformer based approach for antibodycaninisation

Dominik Grabarczyk, Mikołaj Kocikowski, Maciej Parys…·Shay B. Cohen

DoggifAI translates non-canine antibody sequences into canine ones using a transformer model, generating species-appropriate framework regions and preserving binding specificity.

DOI 10.1016/j.immuno.2025.100064

protein sequencetransformer / foundation model

𝕏 PostBluesky