Francesco Codicè

The paper quantifies reverse-complement symmetry in codon usage across taxa and shows it is not fully explained by compositional constraints.

This paper shows that popular scRNA-seq batch correction methods fail to fully remove batch signal, which can affect downstream analyses, and introduces a supervised metric, BPS, to better assess correction effectiveness.

This paper identifies flaws in current Drug Response Prediction evaluation methods and proposes new strategies to improve their reliability and generalization.

MUSE-XAE extracts mutational signatures from cancer genomes using an explainable Auto-Encoder, achieving accurate extraction and improving tumour-type classification.

The paper introduces DisoMine, a method predicting intrinsically disordered regions using protein dynamics and sequence context, outperforming existing predictors.