Author

V. D. Ramanathan

Broad InstituteORCID 0009-0001-6914-6484Unclaimed ORCID profile · follow to get notified of new preprints

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Varshini Ramanathan1 paper · Tufts University

Biology Disciplines

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Research Focus:gene regulatory network inference· 2 Assay:Hi-C· 2 Organism:human· 2 Approach:deep learning· 1 Approach:simulation· 1

Frequent Co-Authors

Anders S. HanseniD· 2 shared Clarice KY HongiD· 2 shared Alexis CaulieriD· 1 shared Ariel D. SwettiD· 1 shared C. GuoiD· 1 shared Emily King· 1 shared Fan FengiD· 1 shared Jie LiuiD· 1 shared

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2025-2026 · peak 1/yr

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10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Anders S. HansenORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 6, 2026

Cohesin loading at regulatory elements shapes 3D genome folding during erythropoiesis

V. D. Ramanathan, C. Guo, Masahiro Nagano…·Anders S. Hansen

The paper identifies 'matchmaker' cis-regulatory elements in erythropoiesis that strengthen loops between neighboring elements and are linked to gene expression and cohesin loading.

DOI 10.64898/2026.08.02.741886

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GenomicsbioRxivPreprintMay 6, 2025

Genome structure mapping with high-resolution 3D genomics and deep learning

Clarice KY Hong, Fan Feng, Varshini Ramanathan…·Anders S. Hansen

The paper introduces Cleopatra, a deep learning model that predicts high-resolution 3D genome maps across human cell types, revealing cell-type-specific loops and gene regulation patterns.

11 citations

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