Author

Amith Z. Abdulla

Brandeis UniversityORCID 0009-0001-7847-8763Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:yeast· 2 Research Focus:differential expression· 1 Organism:mouse· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Kaushik RagunathaniD· 2 shared Agnisrota MazumderiD· 1 shared Alexandria LatudaiD· 1 shared Daniel JostiD· 1 shared Dionysus Morris-Evans· 1 shared Éric FanchoniD· 1 shared Fengting HuangiD· 1 shared Hossein SalariiD· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersMolecular Biology

Kaushik RagunathanORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintOct 30, 2026

Feedback control via H3K9 methylation and siRNA biogenesis autonomously maintains RNAi heterochromatin through continuous low-level transcription

Sumanth Kumar Maheshwaram, Amith Z. Abdulla, Serena Chiu…·Kaushik Ragunathan

DOI 10.64898/2026.10.28.762611

yeaststatistical model

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GeneticsbioRxivPreprintMay 6, 2026

Nucleosome remodeling by a CHD enzyme promotes H3K9 methylation establishment and spreading via remodeler-writer feedback

Melissa Seman, Alexandria Latuda, Agnisrota Mazumder…·Kaushik Ragunathan

This study shows that the CHD remodeler Mit1 initiates heterochromatin formation and H3K9 methylation independently of Clr4, revealing a remodeler-writer feedback mechanism.

DOI 10.64898/2026.05.03.722496

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Systems BiologyPLoS Computational BiologyPeer-reviewedSep 2, 2022

Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells

Kapil Newar, Amith Z. Abdulla, Hossein Salari…·Daniel Jost

The paper develops a mathematical model to predict H3K27 modification distributions in mouse embryonic stem cells, showing quantitative agreement with experimental data on acetylation and methylation.

17 citations

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