Ryan Doughty

The paper introduces Min-Frame Transformation (MFT) to improve viral genome alignment by enhancing MUM-based seeding, resulting in longer and more contiguous matches with better alignment coverage and SNP recall.

bronko detects viral genome variation quickly and without alignment, outperforming existing tools in speed and accuracy for large datasets.

This study evaluates virome protocols to optimize recovery of human fecal viral genomes while minimizing contamination.

The paper evaluates sequence screening tools using a NIST dataset to assess their consistency in identifying sequences of concern.