Author

Qili Shi

Shanghai Medical College of Fudan UniversityORCID 0009-0002-4021-2414Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:diffusion model· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Xianghuo HeiD· 2 shared Zhiao CheniD· 2 shared Hao Wu· 1 shared Haochen LiiD· 1 shared Jiawen JiangiD· 1 shared Junjiao SongiD· 1 shared Li LiuiD· 1 shared Lu WangiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Xianghuo HeORCID

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2 papers

Recent·Most cited

GenomicsBriefings in BioinformaticsPeer-reviewedJan 1, 2026

Human Messenger RNA Harbors Widespread Noncoding Splice Isoforms

Qili Shi, Haochen Li, Junjiao Song…·Xianghuo He

The paper identifies 15,836 noncoding splice isoforms in human mRNA from 7,298 protein-coding genes, showing tissue-specific expression and association with cancer.

1 citation

humanbulk RNA-seq

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GenomicsBiomarker ResearchPeer-reviewedJan 7, 2024

Long-read Transcriptome Landscapes of Primary and Metastatic Liver Cancers at Transcript Resolution

Zhiao Chen, Qili Shi, Yiming Zhao…·Xianghuo He

The paper defines the full-length transcriptome of primary and metastatic liver cancers and identifies isoform-level diversity and metastasis-specific transcripts with clinical implications.

9 citations

humanlong-read sequencing

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