Author

Khoi Huynh

University of Southern CaliforniaORCID 0009-0002-5428-753XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:CRISPR screen· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Aram Sandaldjian ModrekiD· 2 shared Anthony D. LongiD· 1 shared Belen Valor· 1 shared Blake Sun Chang· 1 shared Brittny R. Smith· 1 shared Catherine DoiD· 1 shared Cheol H. ParkiD· 1 shared David Dinh TraniD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersCancer Biology

Aram Sandaldjian ModrekORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintDec 3, 2025

Single-Cell Multiomic Profiling Uncovers Radiation Dosage-Sensitive, Cluster-Specific Regulatory Dynamics in Glioblastoma

Khoi Huynh, Sara Nalina Barcik Weissman, Cheol H. Park…·Aram Sandaldjian Modrek

This study uses single-cell multiomic profiling to show radiation-induced transcriptional and chromatin remodeling in GBM, revealing dose-dependent and cluster-specific regulatory changes.

DOI 10.64898/2025.12.01.691699

humanscRNA-seq

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BioinformaticsbioRxivPreprintMay 7, 2025

mtgRNA-db: An annotated database of multi-target CRISPR-Cas9 guide-RNAs in the human genome

Aram Sandaldjian Modrek, Khoi Huynh, Catherine Do…·Erik P. Sulman

The paper creates a database of multi-target CRISPR-Cas9 guide-RNAs with on- and off-target scores and provides a web tool for selecting these guide-RNAs.

1 citation

humanCRISPR screen

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GeneticsPLoS GeneticsPeer-reviewedMay 5, 2023

Genetic Variation in Chromatin State Across Multiple Tissues in Drosophila melanogaster

Khoi Huynh, Brittny R. Smith, Stuart J. Macdonald, Anthony D. Long

The paper uses ATAC-seq to analyze chromatin accessibility across four tissues in eight Drosophila melanogaster genotypes, identifying polymorphic regions and candidate causal variants after correcting for structural variants.

9 citations

DrosophilaATAC-seq

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