Witold Wolski

qg generates reproducible, configuration-driven acquisition queues for mass spectrometry with QC control and vendor-specific file output.

The paper identifies a stable metabolic-secretory defect in RA monocytes across activation states using multi-omics analysis, linking reduced glycosylation to disease mechanisms.

This study compares multiomic profiles of human and canine soft-tissue sarcomas, revealing molecular similarities and identifying clinically relevant subgroups.

ProteoBench provides a centralized platform for comparing proteomics data analysis workflows, enabling benchmarking and community collaboration.

This paper shows that Staphylococcus aureus uses both genetic and phenotypic changes to resist inhibitory molecules from Pseudomonas aeruginosa.

prolfquapp simplifies differential expression analysis in quantitative proteomics by providing a command-line tool with dynamic HTML reports and integration with existing analysis tools.

prolfqua provides an R package for proteomics differential expression analysis with quality control, normalization, and statistical modeling, showing sensitive and specific results.

This study shows APOE alleles E2, E3, and E4 differentially affect astrocyte metabolism, cholesterol handling, and inflammation in isogenic iPSC-derived cells, with E4 showing disease-relevant dysregulation.

rawDiag is an R package that provides diagnostic plots for optimizing LC-MS methods in proteomics.