Yuan Qi

SCRIPT predicts single-cell cis-regulatory relationships using graph attention networks, achieving high accuracy and improving long-range prediction.

BrainBeacon is a cross-species foundation model for whole-brain spatial transcriptomics that enables cross-species alignment and uncovers spatial regulatory mechanisms of aging.

FLARE is a framework for fast and automatic detection of rare cell populations in flow cytometry data using hierarchical Bayesian models and parallel computation.