Author

James Johnson

The University of QueenslandORCID 0009-0002-9695-0424Unclaimed ORCID profile · follow to get notified of new preprints

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James Johnson5 papers · Denver Zoo

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Anne C. Ferguson‐SmithiD· 1 shared Charles A. IshakiD· 1 shared Coby VineriD· 1 shared Daniel Diniz De CarvalhoiD· 1 shared David J. AdamsiD· 1 shared Hui ShiiD· 1 shared Marcela K. Sjöberg-HerreraiD· 1 shared Michael M. HoffmaniD· 1 shared

Activity by Year

2024-2024 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Anne C. Ferguson‐SmithORCID

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1 paper

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedJan 8, 2024

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

Coby Viner, Charles A. Ishak, James Johnson…·Michael M. Hoffman

The paper develops methods to model transcription factor binding in modified DNA by expanding the DNA alphabet and adapting existing tools to handle custom alphabets, identifying modification-sensitive motifs and validating them with experimental data.

30 citations

DNA methylationstatistical model

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