Author

Hui Shi

University of CambridgeORCID 0000-0001-9126-4607Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Hui Shi1 paper · Chinese Academy of Sciences

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:mouse· 1

Frequent Co-Authors

Anne C. Ferguson‐SmithiD· 2 shared Anastasiya Kazachenka· 1 shared Charles A. IshakiD· 1 shared Coby VineriD· 1 shared Daniel Diniz De CarvalhoiD· 1 shared David J. AdamsiD· 1 shared James JohnsoniD· 1 shared Marcela K. Sjöberg-HerreraiD· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Anne C. Ferguson‐SmithORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedJan 8, 2024

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

Coby Viner, Charles A. Ishak, James Johnson…·Michael M. Hoffman

The paper develops methods to model transcription factor binding in modified DNA by expanding the DNA alphabet and adapting existing tools to handle custom alphabets, identifying modification-sensitive motifs and validating them with experimental data.

30 citations

DNA methylationstatistical model

𝕏 PostBluesky

Developmental BiologybioRxivPreprintApr 18, 2019

Epigenetic regulation of unique genes and repetitive elements by the KRAB zinc finger protein ZFP57

Hui Shi, Ruslan Strogantsev, Nozomi Takahashi…·Anne C. Ferguson‐Smith

The paper investigates ZFP57's role in epigenetic regulation, showing it maintains DNA methylation and repressive marks at imprinted regions but is not essential for silencing transposable elements.

1 citation

𝕏 PostBluesky