Author

Emma A. Deen

University of California, DavisORCID 0009-0003-3380-9180Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Abigail-Mary LehneriD· 1 shared Andrew Matayoshi· 1 shared Aramee C. DiethelmiD· 1 shared Cheryl B. SchultziD· 1 shared Elizabeth E. CroneiD· 1 shared Emilia M. SoginiD· 1 shared Emma M. PeltoniD· 1 shared Eric Quoc PhamiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperEcology

Abigail-Mary LehnerORCID

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2 papers

Recent·Most cited

EcologybioRxivPreprintApr 4, 2026

Spatiotemporal patterns of breeding challenge the successive broods model in a migratory butterfly

Aramee C. Diethelm, Cheryl B. Schultz, Stephanie R. Mcknight…·Elizabeth E. Crone

This study challenges the successive broods model by showing western monarch butterflies exhibit a diffusion-like expansion of breeding rather than sequential generational replacement.

DOI 10.64898/2026.04.01.715883

Drosophilaexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintAug 27, 2025

Microbiome Assembly in Zostera marina during early host development: An EcoFAB 2.0 Application for Aquatic Plant-Microbe Interactions

Gina Chaput, Emma A. Deen, Eric Quoc Pham…·Emilia M. Sogin

This paper uses EcoFAB 2.0 to study microbiome assembly in Zostera marina seedlings, identifying stage-specific microbial indicators and demonstrating controlled microbiome manipulation.

DOI 10.1101/2025.08.27.672729

zebrafishmetagenomics

𝕏 PostBluesky