MTB-KB consolidates fragmented MTB research into a structured knowledgebase with a knowledge graph, enabling exploration of MTB-host interactions and treatment strategies.

Genomics Proteomics & Bioinformatics · Oct 1, 2026Peer-reviewedBioinformatics

NTM-DB: A Comprehensive Non-Tuberculosis Mycobacteria Genomic Database

Tianyi Lu, Cuidan Li, Haobin Wei, Yadong Zhang, Zhuojing Fan, Xiaoyuan Jiang, Jie Wang, Peihan Wang, Kang Shang, Yuting Huang, Hongwei Yang, Bahetibieke Tuohetaerbaike, Ying Li, Haitao Niu, Wenbao Zhang, , Fei Chen

NTM-DB provides a comprehensive genomic database for non-tuberculosis mycobacteria, offering genome assemblies, strain data, and analysis tools to support research and clinical applications.

Genomics Proteomics & Bioinformatics · Jul 9, 2026Peer-reviewedMicrobiology

The GSA Family in 2025: A Broadened Sharing Platform for Multi-Omics and Multimodal Data

Sisi Zhang, Xu Chen, Enhui Jin, Anke Wang, Tingting Chen, Xiaolong Zhang, Junwei Zhu, Lili Dong, Yanling Sun, Caixia Yu, Yubo Zhou, Zhuojing Fan, Huanxin Chen, Shuang Zhai, Yubin Sun, , Wenming Zhao

The paper introduces the GSA Family, a platform for sharing multi-omics and multimodal data, with expanded databases and improved features.

Genomics Proteomics & Bioinformatics · Aug 1, 2025Peer-reviewedGenomics

HaploThread: A Scalable Integrated Desktop Platform for Constructing and Visualizing Haplotype Networks for Large-sample Sequences

Bo Xu, Lun Li, Cuiping Li, Anke Wang, Zhuojing Fan, Shuhui Song

HaploThread constructs and visualizes haplotype networks from large sequence datasets using multi-threaded algorithms and a plugin system.

bioRxiv · Jul 6, 2025 · PreprintBioinformatics