Jingfa Xiao

MTB-KB: A Curated Knowledgebase of Mycobacterium tuberculosis Related Studies

MTB-KB consolidates fragmented MTB research into a structured knowledgebase with a knowledge graph, enabling exploration of MTB-host interactions and treatment strategies.

NTM-DB: A Comprehensive Non-Tuberculosis Mycobacteria Genomic Database

NTM-DB provides a comprehensive genomic database for non-tuberculosis mycobacteria, offering genome assemblies, strain data, and analysis tools to support research and clinical applications.

The GSA Family in 2025: A Broadened Sharing Platform for Multi-Omics and Multimodal Data

The paper introduces the GSA Family, a platform for sharing multi-omics and multimodal data, with expanded databases and improved features.

Lineage-associated Human Divergently-Paired Genes (DPGs) Exhibit Regulatory Characteristics and Evolutionary Trends

The paper identifies human divergently-paired genes (DPGs) and analyzes their conservation, regulatory features, and evolutionary patterns across vertebrate lineages.

Cost-effective DNA storage with DNA movable type

This paper introduces a cost-effective DNA storage system using pre-fabricated DNA movable types that can be reused, reducing storage costs to $122/MB.

Pan-genome and Haplotype Map of Cultivars and Their Wild Ancestors Provides Insights into Adaptive Evolution of Cassava (Manihot esculenta Crantz)

The paper constructs nearly T2T genomes and a pan-genome of cassava cultivars and wild ancestors, revealing domestication genes and evolutionary insights.

The Genome Sequence Archive Family: Towards Explosive Data Growth and Diverse Data Types

The paper introduces the GSA family of repositories to manage explosive growth and diverse data types in genomic data archiving.

Genome Warehouse: A Public Repository Housing Genome-scale Data

The Genome Warehouse (GWH) is a public repository for genome-scale data that provides storage, submission, and visualization tools for genome assemblies across species.

The global landscape of SARS-CoV-2 genomes, variants, and haplotypes in 2019nCoVR

The paper describes the 2019nCoVR resource, which curates and analyzes SARS-CoV-2 genomes, variants, and haplotypes globally, providing daily updates and integration with literature and databases.

Gene-centric intra- and inter-clade recombination in a context of Escherichia coli subpopulations

The paper analyzes recombination patterns in Escherichia coli genomes to show extensive intra-clade recombination and reduced inter-clade recombination, establishing genetic barriers between subpopulations.