Author

Ayumi Uechi

University of the Ryukyus University HospitalORCID 0009-0003-3730-1253Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Organism:E. coli· 2 Research Focus:variant calling· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Itaru HiraiiD· 2 shared Nobuyoshi YagiiD· 2 shared Nanase Miyagi· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersMicrobiology

Itaru HiraiORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintJul 11, 2024

A rapid method to determine the genetic lineage of Escherichia coli using open reading frame composition in the shallow sequencing

Nobuyoshi Yagi, Ayumi Uechi, Itaru Hirai

This study develops a rapid method to determine the genetic lineage of Escherichia coli isolates using open reading frame composition, achieving results in under 30 minutes with high accuracy.

1 citation

E. coliwhole-genome sequencing

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MicrobiologybioRxivPreprintJun 25, 2024

Shallow sequencing (Shall-seq) procedure: A method for determining the genetic lineages and detecting antimicrobial resistance genes of antimicrobial-resistant bacteria using minimum Nanopore sequencing data

Nobuyoshi Yagi, Nanase Miyagi, Ayumi Uechi, Itaru Hirai

This paper introduces a shallow sequencing method using Nanopore data to determine genetic lineages and detect antimicrobial resistance genes in E. coli with minimal data.

2 citations

E. colilong-read sequencing

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