Author

Joshua C. Gilligan

Arc Research InstituteORCID 0009-0003-9343-0113Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andreas S. PuschnikiD· 1 shared April PawlukiD· 1 shared Chiara Ricci-TamiD· 1 shared Fang WaniD· 1 shared Gabriel A. GonzaleziD· 1 shared Gwanggyu SuniD· 1 shared Matthew G. DurrantiD· 1 shared Patrick D. HsuiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Andreas S. PuschnikORCID

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1 paper

Recent·Most cited

GenomicsbioRxivPreprintOct 22, 2026

Systematic mapping of the prokaryotic noncoding sequence space with a genomic language model

Gwanggyu Sun, Tim Hudelmaier, Joshua C. Gilligan…·Patrick D. Hsu

The paper uses a genomic language model to cluster and annotate noncoding sequences in prokaryotic genomes, identifying structured RNAs and their potential functions.

DOI 10.64898/2026.10.21.760802

bacteria (other)DNA methylation

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