Author

Yingjie Li

The Ohio State UniversityORCID 0009-0004-1499-4613Unclaimed ORCID profile · follow to get notified of new preprints

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Yingjie Li1 paper

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:graph neural network· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Anjun MaiD· 2 shared Daniel J. SpakowicziD· 2 shared Jiangjiang ZhuiD· 2 shared Qin MaiD· 2 shared Rebecca HoydiD· 2 shared Shiqi ZhangiD· 2 shared Afaf E.G. OsmaniD· 1 shared Ahmad A. TarhiniiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Anjun MaORCID

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2 papers

Recent·Most cited

BioinformaticsAdvanced SciencePeer-reviewedSep 3, 2024

An explainable graph neural framework to identify cancer-associated intratumoral microbial communities

Zhaoqian Liu, Yuhan Sun, Yingjie Li…·Bingqiang Liu

This paper introduces MICAH, a graph neural network framework that identifies cancer-associated microbial communities in intratumoral microbiome data across five cancer types.

14 citations

humanmetagenomics

𝕏 PostBluesky

BioinformaticsCancer Research CommunicationsPeer-reviewedJan 23, 2024

A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset

Cankun Wang, Anjun Ma, Yingjie Li…·Qin Ma

The paper introduces MEGA, a tool to identify cancer-associated microbes using RNA-seq data from the ORIEN dataset, leveraging graph attention networks and microbial community information.

8 citations

humanbulk RNA-seq

𝕏 PostBluesky