Author

Hongyi Shui

ORCID 0009-0004-2079-1097Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:C. elegans· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Amanda Kyle GibsoniD· 2 shared Anne Nicole Janisch· 2 shared Linyao PengiD· 2 shared Sarah Dede Hesse· 2 shared Victoria K. FeistiD· 2 shared Neha Channamraju· 1 shared Tessa Batterton· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 21 mutual co-author links

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2 shared papersEvolutionary Biology

Amanda Kyle GibsonORCID

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2 papers

Recent·Most cited

From manual counting to YOLO: Using computer vision to automate large-scale fecundity assays in C. elegans

Linyao Peng, Hongyi Shui, Anne Nicole Janisch, Sarah Dede Hesse, Victoria K. Feist, Amanda Kyle Gibson

This paper develops a computer vision approach using YOLO models to automate fecundity assays in C. elegans, achieving high accuracy and reducing human bias compared to manual counting.

PLoS ONE · Jul 30, 2026Peer-reviewedEvolutionary Biology

Defense against parasites covaries with reproductive timing, not with resistance

Amanda Kyle Gibson, Linyao Peng, Tessa Batterton, Neha Channamraju, Victoria K. Feist, Sarah Dede Hesse, Anne Nicole Janisch, Hongyi Shui

This study identifies reproductive timing as a key trait covarying with defense against parasites in C. elegans, rather than resistance.

PLoS Pathogens · Jul 9, 2026Peer-reviewedEvolutionary Biology