Author

Qingying Chen

University of VirginiaORCID 0009-0004-2394-0035Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:CUT&Tag· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Anindya DuttaiD· 1 shared Chongzhi ZangiD· 1 shared Lin L. LiuiD· 1 shared Megan C. GriecoiD· 1 shared Mengxue TianiD· 1 shared Shengen Shawn HuiD· 1 shared Zhangli SuiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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7 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Anindya DuttaORCID

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1 paper

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedMay 22, 2026

PATTY corrects open chromatin bias for improved bulk and single-cell CUT&Tag profiling

Shengen Shawn Hu, Zhangli Su, Lin L. Liu…·Chongzhi Zang

PATTY corrects open chromatin bias in CUT&Tag data using ATAC-seq and machine learning, improving detection of histone modifications and cell clustering in single-cell analyses.

3 citations

CUT&TagATAC-seq

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