Author

Gennady Korotkevich

ITMO UniversityORCID 0009-0004-5941-2816Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Alexey SergushicheviD· 2 shared Boris Shpak· 1 shared Javlon E. Isomurodov· 1 shared Maxim N. ArtyomoviD· 1 shared Nikita AlexeeviD· 1 shared Nikolay Budin· 1 shared Vladimir SukhoviD· 1 shared

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2018-2021 · peak 1/yr

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7 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Alexey SergushichevORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 1, 2021

✦ In-depth digest

Fast gene set enrichment analysis

Gennady Korotkevich, Vladimir Sukhov, Nikolay Budin…·Alexey Sergushichev

FGSEA estimates preranked GSEA P-values down to 10^-100 with predictable error in seconds to minutes, recovering more FDR-significant pathways across 605 GEO datasets than the Broad implementation.

3,741 citations

bulk RNA-seqstatistical model

Systems BiologybioRxivPreprintSep 4, 2018

The Soft Vertex Classification for Active Module Identification Problem

Nikita Alexeev, Javlon E. Isomurodov, Gennady Korotkevich, Alexey Sergushichev

The paper introduces a soft vertex classification method for identifying active modules in biological networks, providing confidence estimates and FDR control.

DOI 10.1101/407460

proteomicsmetabolomics