Rick Beeloo

Sassy is a fast approximate string matching tool for DNA sequences, achieving significant speedups over existing methods for small error tolerances and applied to CRISPR off-target detection.

Sassy2 improves short DNA pattern searching by optimizing SIMD parallelism and filtering, achieving significant speedups over previous methods.

Barbell improves demultiplexing of Nanopore sequencing data by addressing barcode artifacts, reducing trimming errors and barcode bleeding.

This study investigates how microbial communities adapt after coalescence by mixing freshwater and seawater samples in controlled experiments, finding that environmental filtering has a stronger impact than mixing ratios.

Graphite uses a colored De Bruijn graph to paint genomes, reducing matches and revealing new biological insights in microbial genomics.

Jaeger is a deep-learning tool that accurately and quickly identifies bacteriophage sequences in metagenomic data, achieving high sensitivity and precision.