Swapnil Prakash Doijad

This paper organizes a community challenge to develop automated virus taxonomy classification tools and evaluates their performance on a combined dataset of expert-curated and metagenomic sequences.

The paper identifies synchronized codon usage evolution between functionally related genes across bacterial genomes, revealing new functional associations.

This study investigates how microbial communities adapt after coalescence by mixing freshwater and seawater samples in controlled experiments, finding that environmental filtering has a stronger impact than mixing ratios.

Jaeger is a deep-learning tool that accurately and quickly identifies bacteriophage sequences in metagenomic data, achieving high sensitivity and precision.