Author

Xinyu Y. Nie

Texas A&M UniversityORCID 0009-0005-0756-0275Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Jérôme S. MenetiD· 2 shared Yuchao JiangiD· 2 shared Amber Hsieh· 1 shared Audrey JacqiD· 1 shared Changhao LiiD· 1 shared Chanté R. GuyiD· 1 shared Christine MerliniD· 1 shared Chun-Yip TongiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Jérôme S. MenetORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 3, 2025

Single-Cell Multiomic Analysis of Circadian Rhythmicity in Mouse Liver

Chun-Yip Tong, Changhao Li, Audrey Jacq…·Yuchao Jiang

This study uses single-nucleus multiomics to analyze circadian rhythms in mouse liver, revealing gene expression and chromatin accessibility patterns across the day.

4 citations

mousescRNA-seq

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Molecular BiologybioRxivPreprintApr 24, 2024

Regulation of stereotypic chromatin conformations at enhancers by CLOCK:BMAL1

Xinyu Y. Nie, Neha Ahuja, Amber Hsieh…·Jérôme S. Menet

The paper uses single molecule footprinting to study how CLOCK:BMAL1 regulates chromatin conformations at enhancers, revealing cooperative binding and nucleosome remodeling.

1 citation

mouseChIP-seq

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