Author

Elnaz Abdollahzadeh

University of California, IrvineORCID 0009-0005-1330-9183Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:long-read sequencing· 2 Organism:mouse· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:multiome· 1

Frequent Co-Authors

Ali MortazaviiD· 3 shared Erisa TaghizadehiD· 2 shared Negar MojganiiD· 2 shared A. Sina BooeshaghiiD· 1 shared Barbara J. WoldiD· 1 shared Brian A. WilliamsiD· 1 shared Delaney K. SullivaniD· 1 shared Diane E. TroutiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Ali MortazaviORCID

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3 papers

Recent·Most cited

GenomicsBioinformaticsPeer-reviewedFeb 27, 2026

Dogme: A nextflow pipeline for reprocessing nanopore RNA and DNA modifications

Elnaz Abdollahzadeh, Ali Mortazavi

Dogme is a Nextflow pipeline that automates reprocessing of ONT data for modification detection and transcript quantification, showing reproducible results across biological replicates.

2 citations

mouselong-read sequencing

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GenomicsCell GenomicsPeer-reviewedDec 31, 2025

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains captures global and local expression variation

Elisabeth Rebboah, Ryan Weber, Elnaz Abdollahzadeh…·Ali Mortazavi

The paper characterizes transcriptomes across 8 tissues in 8 mouse strains to identify expression variation linked to genetic differences and phenotypic traits.

6 citations

mousescRNA-seq

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GenomicsbioRxivPreprintDec 25, 2025

Genome-wide analysis of FSHD cell lines using Nanopore sequencing reveals allele-specific differences at DUX4 target genes and complex repeats

Jasmine Sakr, Xiangduo Kong, Negar Mojgani…·Ali Mortazavi

DOI 10.64898/2025.12.22.696056

humanlong-read sequencing

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