Author
Jasmine Sakr
University of California, IrvineORCID 0000-0002-4470-3192Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2022-2025 · peak 2/yrCo-Author Collaboration Network
10 top collaborators · 45 mutual co-author links5 papers
Recent·Most cited
Long-read sequencing transcriptome quantification with lr-kallisto
Rebekah K. Loving, Delaney K. Sullivan, Fairlie Reese, Elisabeth Rebboah, Jasmine Sakr, Narges Rezaie, Heidi Yahan Liang, Ghassan Filimban, Shimako Kawauchi, A. Sina Booeshaghi, Páll Melsted, Conrad G. Oakes, Diane E. Trout, Brian A. Williams, Grant R. MacGregor, , Lior S. Pachter
The paper develops lr-kallisto, a tool for accurate long-read transcriptome quantification using ONT data, showing improved results with exome capture.
PLoS Computational Biology · Dec 1, 2025Peer-reviewedBioinformatics
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity
Fairlie Reese, Brian A. Williams, Gabriela Balderrama-Gutierrez, Dana Wyman, Muhammed Hasan Çelik, Elisabeth Rebboah, Narges Rezaie, Diane E. Trout, Milad Razavi-Mohseni, Yunzhe Jiang, Beatrice Borsari, Samuel Morabito, Heidi Yahan Liang, Cassandra Joan McGill, Sorena Rahmanian, , Ali Mortazavi
Long-read sequencing of 81 human and mouse samples yields 200,000 full-length transcripts plus a triplet framework that separates promoter choice, splicing and 3' end use across tissues.
bioRxiv · May 15, 2023 · PreprintGenomics
A Trem2*R47H mouse model without cryptic splicing drives age- and disease-dependent tissue damage and synaptic loss in response to plaques
Kristine M. Tran, Shimako Kawauchi, Enikö A. Kramár, Narges Rezaie, Heidi Yahan Liang, Jasmine Sakr, Ángela Gómez-Arboledas, Miguel A. Arreola, Celia da Cunha, Jimmy Phan, Shuling Wang, Sherilyn Collins, Amber Walker, Kai‐Xuan Shi, Jonathan C. Neumann, , Kim N. Green
Molecular Neurodegeneration · Feb 17, 2023Peer-reviewedNeuroscience
Engineered SMCHD1 and D4Z4 mutations reveal roles of D4Z4 heterochromatin disruption and feedforward DUX4 network activation in FSHD
Xiangduo Kong, Nam Viet Nguyen, Yumeng Li, Jasmine Sakr, Katherine Williams, Sheila Sharifi, Jonathan Chau, Altay Bayrakci, Seiya Mizuno, Satoru Takahashi, Tohru Kiyono, Rabi Tawil, Ali Mortazavi, Kyoko Yokomori
The paper uses engineered human myoblasts to show that D4Z4 heterochromatin disruption and DUX4 network activation are key in FSHD.
bioRxiv · Oct 14, 2022 · PreprintGenetics