Shihao Ma

A reasoning LLM combining ESM3 embeddings with GO-GPT term predictions produces protein function annotations that experts rated tie-or-better than UniProt in 79% of cases (SFT model).

X-Cell predicts causal perturbation responses across diverse cellular contexts using a diffusion language model trained on a large CRISPRi Perturb-seq dataset.

scDeepHash provides a scalable method for automated cell-type annotation and cell retrieval in scRNA-seq datasets using deep hashing, showing competitive performance against existing methods.