Author

Alex Lavaee

Boston Children's HospitalORCID 0009-0006-0751-193XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:spatial domain detection· 1 Research Focus:trajectory inference· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Adam Ingemansson· 1 shared Arkash JainiD· 1 shared Gustavo ScanavachiiD· 1 shared Jose Inacio Costa-FilhoiD· 1 shared Tomas L. KirchhauseniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperCell Biology

Adam Ingemansson

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1 paper

Recent·Most cited

Cell BiologybioRxivPreprintJan 25, 2026

SpatialDINO: A Self-Supervised 3D Vision Transformer that enables Segmentation and Tracking in Crowded Cellular Environments

Alex Lavaee, Arkash Jain, Gustavo Scanavachi…·Tomas L. Kirchhausen

SpatialDINO enables automated segmentation and tracking of crowded cellular objects using self-supervised 3D vision transformers without manual annotations or retraining.

1 citation

fluorescence / live-cell microscopydeep learning

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