Author

Arkash Jain

Boston Children's HospitalORCID 0000-0003-2692-7472Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:clustering· 2 Approach:deep learning· 2 Research Focus:spatial domain detection· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:contrastive learning· 1 Assay:electronic health records· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Jose Inacio Costa-FilhoiD· 2 shared Tomas L. KirchhauseniD· 2 shared Adam Ingemansson· 1 shared Akhil NairiD· 1 shared Alex LavaeeiD· 1 shared Anwesha SanyaliD· 1 shared Athul NairiD· 1 shared Elliott SomervilleiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCell Biology

Jose Inacio Costa-FilhoORCID

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2 papers

Recent·Most cited

Cell BiologybioRxivPreprintJan 25, 2026

SpatialDINO: A Self-Supervised 3D Vision Transformer that enables Segmentation and Tracking in Crowded Cellular Environments

Alex Lavaee, Arkash Jain, Gustavo Scanavachi…·Tomas L. Kirchhausen

SpatialDINO enables automated segmentation and tracking of crowded cellular objects using self-supervised 3D vision transformers without manual annotations or retraining.

1 citation

fluorescence / live-cell microscopydeep learning

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Cell BiologyThe Journal of Cell BiologyPeer-reviewedOct 2, 2025

Close-Up of vesicular ER Exit Sites by Volume Electron Imaging using FIB-SEM

Athul Nair, Akhil Nair, Patrick Stock…·Tomas L. Kirchhausen

The paper uses FIB-SEM and ASEM to identify and characterize vesicular ER exit sites in mammalian cells, revealing their abundance and organization.

8 citations

humanmouse

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