Author

Xiaoya Shi

Agricultural Genomics Institute at ShenzhenORCID 0009-0006-6662-4256Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:virus· 2 Assay:whole-genome sequencing· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1 Assay:DNA methylation· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

Yongfeng ZhouiD· 3 shared Hua XiaoiD· 2 shared Mengyan ZhangiD· 2 shared Tianhao ZhangiD· 2 shared Yuting LiuiD· 2 shared Zhongjie LiuiD· 2 shared Brandon S. GautiD· 1 shared Chuan ZhangiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersPlant Biology

Yongfeng ZhouORCID

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3 papers

Recent·Most cited

Plant BiologyHorticulture ResearchPeer-reviewedApr 10, 2025

The dynamics of wild Vitis species in response to climate change facilitate the breeding of grapevine and its rootstocks with climate resilience

Mengyan Zhang, Xiaodong Xu, Tianhao Zhang…·Zhi‐Yao Ma

This study predicts future climate impacts on grapevine and wild Vitis species using ecological niche models, showing wild species may provide climate-resilient rootstocks for breeding.

13 citationstop 3%

virusstatistical model

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Plant BiologyProceedings of the National Academy of SciencesPeer-reviewedFeb 7, 2025

The genomic and epigenomic dynamics of hemizygous genes across crops with contrasting mating systems

Yanling Peng, Yiwen Wang, Yuting Liu…·Yongfeng Zhou

This study examines hemizygous genes in 22 crop genomes, finding higher hemizygosity in clonal lineages and distinct expression and epigenetic features compared to diploid genes.

21 citationstop 1%

plant (other)whole-genome sequencing

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GenomicsbioRxivPreprintSep 11, 2024

Haplotype-resolved assemblies provide insights into genomic makeup of the oldest grapevine cultivar (Munage) in Xinjiang

Haixia Zhong, Xiaoya Shi, Fuchun Zhang…·Hua Xiao

This study presents haplotype-resolved genome assemblies for two Munage grapevine cultivars, identifies genes associated with fruit color traits, and highlights adaptive selection in ancient grapevines.

1 citation

viruswhole-genome sequencing

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