Author

Haruko Nakagawa

Institute of Science Tokyo HospitalORCID 0009-0006-7761-5590Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Fuyuki MiyaiD· 1 shared Itoshi NikaidoiD· 1 shared Michina Morioka· 1 shared Naoya IshibashiiD· 1 shared Sadakatsu IkedaiD· 1 shared Satoru Aoyama· 1 shared Takashi KamataniiD· 1 shared Yasuyuki ShimaiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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1 shared paperBioinformatics

Fuyuki MiyaORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 10, 2026

MARiO: predicting cancer variant pathogenicity by integrating in silico evaluation and patient-level mutational contexts

Haruko Nakagawa, Takashi Kamatani, Naoya Ishibashi…·Sadakatsu Ikeda

MARiO predicts cancer missense variant pathogenicity by integrating variant-level features and patient-level clinical and genomic contexts, achieving high accuracy.

DOI 10.64898/2026.07.07.736919

humanwhole-exome sequencing

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BioinformaticsBMC GenomicsPeer-reviewedSep 25, 2025

MitoDelta: identifying mitochondrial DNA deletions at cell-type resolution from single-cell RNA sequencing data

Haruko Nakagawa, Yasuyuki Shima, Yohei Sasagawa, Itoshi Nikaido

MitoDelta detects mitochondrial DNA deletions at cell-type resolution using single-cell RNA sequencing data, revealing distinct deletion burdens across neuronal subtypes in Parkinson's disease.

2 citations

humanscRNA-seq

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