Pierre Klemmer

The paper describes the development and evaluation of an agentic framework using LLMs to explore molecular interaction maps through user-driven prototyping and testing.

This study uses Boolean modeling on PD cohorts to show sex-specific miRNA dysregulation affects mitochondrial biogenesis, mitophagy, and autophagy in Parkinson's disease.

This paper benchmarks four Boolean network optimization methods for gene regulatory modeling, showing distinct performance in accuracy, efficiency, and robustness to perturbations.