Feifei Li

The paper shows that long-term heat shock causes chromatin conformation changes in K562 cells due to cell cycle arrest, not chromatin accessibility changes.

The paper identifies Alu sequences as key mediators of enhancer-promoter interactions through trans-acting R-loops formed by eRNAs, showing their functional and evolutionary significance.

The paper introduces deNOPA, a tool for predicting nucleosome positions from ATAC-seq data, showing it outperforms existing tools and works with ultrasparse data.

The paper introduces a method to reconstruct disease-associated protein-protein interaction networks using comprehensive influence analysis, outperforming existing methods and applying it to prostate cancer and Parkinson's disease.

Delta integrates 3D chromosomal structure with genomic data to visualize and analyze regulatory networks, revealing insights into gene regulation through a case study on the beta-globin region.