Author

Upasana Dhakal

Oregon State UniversityORCID 0009-0007-3427-8544Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:fungi (other)· 1 Research Focus:GWAS / association mapping· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Jeff H. ChangiD· 2 shared Alexandra J. WeisbergiD· 1 shared Camilo H. Parada-RojasiD· 1 shared Christopher ToomajianiD· 1 shared Fernanda Iruegas-BocardoiD· 1 shared Hung Phan· 1 shared Logan K. BlairiD· 1 shared Martha A. SudermanniD· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Jeff H. ChangORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 31, 2025

PathogenSurveillance: an automated pipeline for population genomic analyses and pathogen identification

Zachary Foster, Martha A. Sudermann, Camilo H. Parada-Rojas…·Niklaus J. Grünwald

PathogenSurveillance automates population genomic analyses of WGS data to enable rapid pathogen identification and biosurveillance.

3 citations

whole-genome sequencingexperimental assay

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GeneticsbioRxivPreprintSep 25, 2025

Genome-wide association study of DMI fungicide sensitivity detects numerous small-effect variants in the major North American population of Fusarium graminearum

Upasana Dhakal, Christopher Toomajian

This study performs a genome-wide association study to identify genetic variants linked to DMI fungicide sensitivity in Fusarium graminearum, finding numerous small-effect variants and common QTNs for two fungicides.

DOI 10.1101/2025.09.25.678624

fungi (other)whole-genome sequencing

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GenomicsbioRxivPreprintMay 22, 2025

Everything, everywhere, all at once - Surveillance and molecular epidemiology reveal Melissococcus plutonius is endemic among Michigan, US beekeeping operations of all sizes and present in some honey bee colonies year-round

Peter D. Fowler, Upasana Dhakal, Jeff H. Chang, Meghan O’Grady Milbrath

This study uses surveillance and molecular epidemiology to show Melissococcus plutonius is widespread in Michigan beekeeping operations and present year-round, with seasonal infection peaks and genetic diversity within hives.

1 citation

humanstatistical model

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