Author

Kexing Li

Tsinghua UniversityORCID 0009-0007-5836-3356Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Hongli MaiD· 1 shared Hongyu LiiD· 1 shared Hongyu ZhaoiD· 1 shared Mengtao LiiD· 1 shared Pengfei BaoiD· 1 shared Tianyu LiuiD· 1 shared Xiaofan LiuiD· 1 shared Yuge WangiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Hongli MaORCID

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2 papers

Recent·Most cited

BioinformaticsAdvanced SciencePeer-reviewedMar 23, 2026

Evaluating the Utilities of Foundation Models in Single-cell Data Analysis

Tianyu Liu, Kexing Li, Yuge Wang…·Hongyu Zhao

This study evaluates foundation models for single-cell data analysis across eight tasks, finding that task-specific methods may outperform them in some cases and proposing guidelines for improving FM performance.

62 citationstop 1%

scRNA-seqdeep learning

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BioinformaticsbioRxivPreprintMay 23, 2023

Pathformer: a biological pathway informed Transformer integrating multi-omics data for disease diagnosis and prognosis

Xiaofan Liu, Yuhuan Tao, Zilin Cai…·Zhi John Lu

Pathformer integrates multi-omics data using a pathway-informed Transformer to improve cancer diagnosis and prognosis prediction.

3 citations

humanbulk RNA-seq

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