Benjamin Giovanni Iovino

gene2fish arranges 53,595 Thisse in situ hybridization images of 8,263 zebrafish genes into a gene-by-stage grid, with anatomy-term search for validating scRNA-seq markers.

DanioDecima improves gene expression prediction in zebrafish by transferring knowledge from human and mouse models, enhancing correlations and generating synthetic promoters with expected lineage-specific motifs.

The paper presents Zebrahub-Multiome, a single-cell multiomic atlas of zebrafish embryogenesis, revealing gene regulatory network dynamics and cis-regulatory elements across developmental stages.

The paper introduces DCTdomain, a method that segments proteins into domains and uses discrete cosine transformation to create domain-level embeddings for improved protein similarity search.