Author

Zhiyun Lei

Howard Hughes Medical InstituteORCID 0009-0007-6796-2182Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 2

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Assay:spatial transcriptomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:imaging· 1

Frequent Co-Authors

Aaron R. HalperniD· 2 shared Xiaowei ZhuangiD· 2 shared Bosiljka TasiciD· 1 shared Catherine G. DulaciD· 1 shared Hongkui ZengiD· 1 shared Kimberly A. SmithiD· 1 shared Limor CoheniD· 1 shared Meng ZhangiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersNeuroscience

Aaron R. HalpernORCID

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2 papers

Recent·Most cited

NeuroscienceeLifePeer-reviewedDec 27, 2024

Three-dimensional single-cell transcriptome imaging of thick tissues

Rongxin Fang, Aaron R. Halpern, Mohammed Mostafizur Rahman…·Xiaowei Zhuang

This paper introduces a 3D MERFISH method for imaging thick tissues, demonstrating its application on mouse brain sections with high accuracy.

14 citations

mousespatial transcriptomics

𝕏 PostBluesky

NeuroscienceNaturePeer-reviewedDec 13, 2023

✦ In-depth digest

A molecularly defined and spatially resolved cell atlas of the whole mouse brain

Meng Zhang, Xingjie Pan, Won Jung…·Xiaowei Zhuang

MERFISH profiling of >1,100 genes in ~8 million cells spanning the whole mouse brain, integrated with scRNA-seq, maps >5,000 clusters into the Allen Common Coordinate Framework.

509 citationstop 1%

mousespatial transcriptomics

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