Author

Mallak Ali

ORCID 0009-0007-8169-0996Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:cryo-EM· 1 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Assay:imaging· 1 Approach:machine learning (classical)· 1 Organism:multiple species· 1

Frequent Co-Authors

Bridget O CarragheriD· 2 shared David A. AgardiD· 2 shared Elizabeth A. MontabanaiD· 2 shared Garrett A. GreenaniD· 2 shared Jonathan SchwartziD· 2 shared Joshua HutchingsiD· 2 shared Mohammadreza ParaaniD· 2 shared Ariana PeckiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersCell Biology

Bridget O CarragherORCID

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2 papers

Recent·Most cited

Cell BiologyNature MethodsPeer-reviewedMay 25, 2026

✦ In-depth digest

AreTomoLive: Automated reconstruction of comprehensively-corrected and denoised cryo-electron tomograms in real-time and at high throughput

Ariana Peck, Yue Eric Yu, Mohammadreza Paraan…·Shawn Q. Zheng

AreTomo3 and DenoisET form an automated GPU pipeline that reconstructs cryo-electron tomograms with tile-based contrast transfer function correction, screens their quality, and denoises them during acquisition.

23 citationstop 1%

multiple speciesimaging

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Cell BiologybioRxivPreprintMay 22, 2026

Characterization Standard for In-situ Cryo-electron Tomography

Mallak Ali, Joshua Hutchings, Tahiti Dutta…·Mohammadreza Paraan

The paper introduces PP7 virus-like particles as a standardized benchmark for cryo-electron tomography, enabling rapid validation and resolution assessment of tomographic pipelines.

DOI 10.64898/2026.05.20.726049

E. colicryo-EM

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