Author

Aleksandra Kushnareva

Helmholtz Centre for Infection ResearchORCID 0009-0008-5475-6707Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexey A. GurevichiD· 3 shared Azat TagirdzhanoviD· 2 shared Ilia OlkhovskiiiD· 2 shared Alice Carolyn McHardyiD· 1 shared Andreas KelleriD· 1 shared Daria Tupikina· 1 shared Georges Pierre SchmartziD· 1 shared Hesham Almessady· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersBioinformatics

Alexey A. GurevichORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 15, 2026

BGC-QUAST: a quality assessment tool for genome mining software

Aleksandra Kushnareva, Daria Tupikina, Hesham Almessady…·Alexey A. Gurevich

BGC-QUAST evaluates and compares BGC predictions across samples, assemblies, and tools to facilitate biosynthetic potential analysis.

1 citation

whole-genome sequencingbenchmark study

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJun 25, 2026

Nerpa 2: probabilistic linking of biosynthetic gene clusters to nonribosomal peptides

Ilia Olkhovskii, Aleksandra Kushnareva, Azat Tagirdzhanov, Alexey A. Gurevich

Nerpa 2 links biosynthetic gene clusters to nonribosomal peptides using probabilistic models, improving accuracy and scalability in pathway reconstruction.

1 citationtop 5%

statistical modelgene regulatory network inference

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedOct 30, 2023

ABC-HuMi: the Atlas of Biosynthetic Gene Clusters in the Human Microbiome

Pascal Hirsch, Azat Tagirdzhanov, Aleksandra Kushnareva…·Alexey A. Gurevich

ABC-HuMi catalogs 19,218 biosynthetic gene clusters from the human microbiome, offering a comprehensive resource for exploring bioactive compound potential.

19 citations

humanmetagenomics

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