Author

Yu Ding

The University of Texas MD Anderson Cancer CenterORCID 0009-0008-7845-560XUnclaimed ORCID profile · follow to get notified of new preprints

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Yu Ding2 papers · Shanghai Jiao Tong University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Matthew D. MontierthiD· 2 shared Quang TraniD· 2 shared Ruonan LiiD· 2 shared Shuangxi JiiD· 2 shared Wenyi WangiD· 2 shared Aaron Wu· 1 shared Ankita PauliD· 1 shared Carissa Fong· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Matthew D. MontierthORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 6, 2026

Tumor cell specific total mRNA expression informed neural networks predicts cancer progression

Ankita Paul, Jessica C. Lal, Shuangxi Ji…·Wenyi Wang

TmSNet predicts tumor cell-specific total mRNA expression from multi-omic data, achieving high accuracy across cancer types and external cohorts.

DOI 10.64898/2026.05.01.722212

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 31, 2021

Scalable subclonal reconstruction of cancer cells in DNA sequencing data using a penalized likelihood model

Yujie Jiang, Matthew D. Montierth, Yu Ding…·Wenyi Wang

CliPP reconstructs subclonal architecture in cancer DNA sequencing data efficiently and accurately, outperforming existing methods in speed while maintaining high concordance with consensus calls.

2 citations

humanwhole-exome sequencing

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