Soobon Ko

This paper benchmarks sequence-based and AlphaFold-based methods for predicting pMHC-II binding cores, finding that AlphaFold-based methods excel at identifying binders while NetMHCIIpan is better at identifying non-binders.

This study deimmunizes a Salmonella phosphatase by mutating buried residues, enhancing its catalytic function while reducing immunogenicity.

This study evaluates computational epitope prediction tools on Fel d 1 allergen and other allergens, finding limited effectiveness and highlighting the need for improved methods.