Author

Stefany Ayala-Montaño

University of FreiburgORCID 0009-0009-1407-4397Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:deconvolution· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1

Frequent Co-Authors

Ayorinde O. AfolayaniD· 2 shared Sandra ReuteriD· 2 shared Ifeoluwa J. AkintayoiD· 1 shared Laura Santos· 1 shared Raisa KociurzynskiiD· 1 shared Ulrike LöberiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

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2 shared papersBioinformatics

Ayorinde O. AfolayanORCID

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2 papers

Recent·Most cited

BioinformaticsMicrobial GenomicsPeer-reviewedJan 22, 2026

Mitigation and detection of putative microbial contaminant reads from long-read metagenomic datasets

Stefany Ayala-Montaño, Ayorinde O. Afolayan, Raisa Kociurzynski…·Sandra Reuter

This paper introduces a decontamination method for long-read metagenomic datasets, identifying and mitigating microbial contaminants in neonatal samples.

DOI 10.1099/mgen.0.001609

humanmetagenomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 20, 2024

Assessing the performance of current strain resolution tools on long-read metagenomes

Ayorinde O. Afolayan, Stefany Ayala-Montaño, Ifeoluwa J. Akintayo…·Sandra Reuter

This study evaluates three strain resolution tools on long-read metagenomes, finding TRACS excels in haplotype completeness and efficiency, while Strainy shows high haplotype accuracy.

2 citations

long-read sequencingstatistical model

𝕏 PostBluesky