bioRxivBiophysicsPreprint
Lipid droplets 3D full measurement by holographic in-flow tomography
D. Pirone, D. Sirico, L. Miccio, V. Bianco, M. Mugnano, D. Del Giudice, G. Pasquinelli, S. Valente, S. Lemma, L. Iommarini, I. Kurelac, P. Memmolo, P. Ferraro
Abstract
The most recent discoveries in the biochemical field are highlighting the increasingly important role of lipid droplets (LDs) in several regulatory mechanisms in living cells. LDs are dynamic organelles and therefore their complete characterization in terms of number, size, spatial positioning and relative distribution in the cell volume can shed light on the roles played by LDs. Until now, fluorescence microscopy and transmission electron microscopy are assessed as the gold standard methods for identifying LDs due to their high sensitivity and specificity. However, such methods generally only provide 2D assays and partial measurements. Furthermore, both can be destructive and with low productivity, thus limiting analysis of large cell numbers in a sample. Here we demonstrate for the first time the capability of 3D visualization and the full LD characterization in high-throughput with a tomographic phase-contrast flow-cytometer, by using ovarian cancer cells and monocyte cell lines as models. A strategy for retrieving significant parameters on spatial correlations and LD 3D positioning inside each cell volume is reported. The information gathered by this new method could allow more in depth understanding and lead to new discoveries on how LDs are correlated to cellular functions.
- organism: human
- assay: imaging
- research focus: cell type annotation
- research focus: spatial domain detection
- approach: microscopy & imaging analysis
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Label-Free 4D Holotomography with Depth-Adaptive Segmentation for Quantitative Analysis of Lipid Droplet Dynamics in Hepatic Organoids
Jimin Cho, Hoyeon Lee, … Bon‐Kyoung Koo·Biophotonics discovery.Peer-reviewed·Sep 30, 2026
- Three-dimensional Label-Free Measurements of Adipocyte Differentiation and Lipid Droplet Dynamics
E. Y. Jeong, H.-J. Kim, … Y. M. Kim·bioRxiv·Jan 6, 2024
- Methods for making and observing model lipid droplets
S. A. Gandhi, S. Parveen, … C. V. Kelly·bioRxiv·Jul 17, 2023
- Quantitative profiling of lysosomal accumulation through label-free biomarkers via High-Content Holo-Tomographic Flow Cytometry
Daniele Pirone, Michela Schiavo, … Pietro Ferraro·bioRxiv·Mar 11, 2025
- Three-dimensional Isotropic Imaging of Live Suspension Cells Enabled by Droplet Microvortices
B. Cardenas-Benitez, R. Hurtado, … A. P. Lee·bioRxiv·Dec 1, 2023
- An in vivo reporter for tracking lipid droplet dynamics in transparent zebrafish
D. Lumaquin, E. Johns, … R. White·bioRxiv·Nov 9, 2020